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AMAM Zonaed Siddiki
Professor
Department of Pathology and Parasitology
Faculty of Veterinary Medicine


About
Qualifications
Honours
Publications
Funding
Supervision


Prof. AMAM Zonaed Siddiki received the DVM and M.S. in Parasitology degrees in Veterinary Sciences from the Bangladesh Agricultural University (BAU) in Mymensingh, Bangladesh, and the Ph.D. degree from the Department of Preclinical Veterinary Sciences, University of Liverpool, England, UK under Commonwealth Scholarship scheme in 2006. He joined as a Lecturer in the Department of Pathology and Parasitology, CVASU in 2000 and served as an Assistant Professor from 2002 until 2008 and an Associate Professor from 2008 until 2013. Currently, he holds a position of Professor in the Department of Pathology and Parasitology, CVASU. His research interests are in the areas of parasitic genomics, proteomics, bioinformatics, molecular diagnostics, DNA Barcoding, computational biology and system biology with phylodynamics and NGS data analyses strategies. Prof. Siddiki has a strong record of research in his area as evident by receiving a number of awards and fellowships from different prestigious organizations like The British Council, Government of Australia, US Dept. of Agriculture (USDA), UK Commonwealth Scholarship Commission, DAAD (Germany), Fulbright scholarship commission (USA), ICGEB (Trieste, Italy), Matsumae Foundation (Japan), ENSF (Italy) and TWAS (Italy). He received several prestigious international positions including first Bangladeshi veterinarian to receive Fulbright visiting scholarship in USA (2016), Australian Alumni Excellence Awardee (2015), USDA Norman E Borlaug Fellowship Awardee (2014), ICGEB postdoctoral fellow (2008), Commonwealth academic fellow (2012), TWAS Associate Fellow (2016) and British Council Talented Researcher Awardee (2010) during his academic career. Until now he has received many grants from different national and international sources including NST, DAAD, USDA, The British Council, TWAS, TWAS-COMSTECH, HEQEP-UGC, AuthorAid (UK) etc. He has published many peer-reviewed research articles and supervised 15 postgraduate students. 










Research Interests



Experience


Teaching
•   Professor in Pathology and Parasitology, CVASU from Oct. 10, 2000 to Present

Others
•   Others in all, CVASU from Oct. 10, 2020 to Present


Teaching : Current Courses


Masters
Course Name Course Code Department
Molecular Parasitology MPR 601 Department of Pathology and Parasitology


Contact

Email:
zsiddiki@cvasu.ac.bd
zsiddiki@gmail.com

Cell Phone:   01717718884

T&T:   88031659093

Fax:   88031659210

Location

Room No.:208, Old Academic Building-1, Department of Pathology and Parasitology, Faculty of Veterinary Medicine,
Khulshi, Chattogram campus.

Find Me on..


Similar to Me

Dr. A.S.M Lutful Ahasan
Professor
Department of Anatomy and Histology
Faculty of Veterinary Medicine
Professor Dr. Ashutosh Das
Head
Department of Genetics and Animal Breeding
Faculty of Veterinary Medicine
Md. Zohorul Islam
Associate Professor
Department of Microbiology and Veterinary Public Health
Faculty of Veterinary Medicine

Qualifications


Educational Qualifications

Exam

Major

Institute

Country

Year

Result

PhD

Molecular Parasitology

University of Liverpool

United Kingdom

2002-2006

Pass

MS in Parasitology

Veterinary Parasitology

Bangladesh Agricultural University

Bangladesh

1999-2000

1st class 1st 

DVM (Doctor of Veterinary Medicine)

Veterinary Science

Bangladesh Agricultural University

Bangladesh

1994-1999

1st Class 4th 

H.S.C.

Science

Narsingdi Govt. College

Bangladesh

1990-1993

1st Division, Star

S.S.C.

Science

B.KKM High School

Bangladesh

1980-1990

1st Division


Trainings Received

Professional and Training courses attended

 

  1. Four days-long “Biosafety in tissue culture ” organised by CRDF Global (USA) at, Dhaka. 20-23 January 2020.
  2. Three weeks-long “National Defence College Capstone course 2019” organised by National Defence College, Dhaka Cantonment, Dhaka. 24 March-10 April 2019 
  3. Three days-long training workshop on “Intellectual Property rights and Technology Commercialisation in Agriculture” organised by Krishi Gobeshona Foundaion (KGF) in BRAC CDM, Savar, Dhaka. 27-29 June 2018 
  4. Three weeks long training course  on “International Visitor Leadership Program (IVLP)” organised by US Dept. of State, USA, 1-20 April, 2018
  5. Four days long training course on “Biomolecular interactions and dynamics” organised by Bioinformatics Infrastrucures Facility, Assam Agricultural University, Guwahati, India. 3-6 January 2017
  6. Three weeks long training course  on “Molecular and cellular biology of parasites and vectors” organised by Liverpool School of Tropical Medicine in Liverpool, UK, 7 January -1 February, 2013
  7. Five days-long Wellcome Trust Advanced Bioinformatics Course on “Working with Pathogen Genomes” organised jointly by the Wellcome Trust (UK) and Mahidol-Oxford Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand. 20-24 February 2012 
  8. Four days-long workshop on Apicomplexan database resource training entitled “ApiDB 2007” organised by the Center for Tropical and Emerging Global Diseases (CTEGD) and the Department of Genetics at the University of Georgia, in Athens, GA, USA. 3-6 June, 2007 
  9. Six weeks long training course on “Computer networking and database management” organised by Ministry of foreign affairs, Government of India in cooperation with Tata consultancy services, New Delhi. INDIA. 12 Jan, 07 to 25 Feb, 2007
  10. Three day long “Introductory statistics” course organised by Faculty of Biomedical and Life Sciences, University of Glasgow, Scotland, UK. March, 2004. 
  11. Two day long “Research Bioethics” course organised by Faculty of Biomedical and Life Sciences, University of Glasgow, Scotland, UK 20-21 March, 2004. 

 

 

Workshops attended / facilitated

 

  1. Three-days long International Hands on training Workshop on Data science and cloud computing organised by Nextgen Informatics Ltd, Chittagong, Bangladesh; 21-23 October 2019
  2. Facilitator of the Workshop on “Research ethics and plagiarism” organised by Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 15 September 2019
  3. Facilitator of the Workshop on “Introduction to R statistical package” organised by USDA funded Biotech Research project of Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 10-11 September 2019
  4. Two-days long Workshop on Bangladesh Dialogue event on enabling equitable research system organised by Bangladesh Academy of Science (BAS) and INASP (UK). Dhaka, Bangladesh; 5-6 November 2018
  5. Facilitator of the Workshop on Career in Bioinformatics and computational Biology organised by Asian University for Women (AUW), Chittagong, Bangladesh. 14 August 2017
  6. Facilitator of the Workshop on NGS and WGS data analyses strategies for the beginners organised by Dept. of Microbiology, University of Dhaka, Bangladesh. 12 November 2016
  7. Facilitator of the Workshop on “Genomics, proteomics and networks in biology analyses” organised by Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 12-13 March, 2014 
  8. Facilitator of the Workshop on “Role of PRTC in promoting University-Industry Link of CVASU” organised by PRTC, Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 22 June, 2013
  9. Facilitator of the Workshop on “DNA Barcoding: Use of Molecular Techniques and Bioinformatics” organised by PRTC, Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 21-24 April, 2013
  10. Facilitator of the National Workshop on “Recent sequencing of goat genome: Implications for goat research and development in Bangladesh” organised by Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 17 June, 2013
  11. Facilitator of the 2 days-long National Training Workshop on “Advanced genomic and bioinformatics tools for computational biology” organised by Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 29-30 May, 2013
  12. Facilitator of the 2 days-long National Training Workshop on “Application of Statistical software packages (SPSS, STATA and SAS) for data mining” organised by Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 12-13 May, 2013
  13. Facilitator of the 2 days-long National Training Workshop on “Improving Research Communication Skills” organised jointly by The Academy of Sciences for the Developing World (TWAS), Italy and Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 15-16 April, 2013
  14. Facilitator of the 2 days-long International Training Workshop on “Bioinformatics and Computational Biology in South Asian Perspective” organised jointly by The Academy of Sciences for the Developing World (TWAS), Italy and Chittagong Veterinary and Animal Sciences University at Chittagong, Bangladesh. 25-26 September, 2012
  15. Facilitator of the 6 days-long Hands-on training Workshop on “Techniques in Molecular Biology and their applications” organised jointly by the Poultry Research and Training Centre, Chittagong Veterinary and Animal Sciences University and University Grants Commission of Bangladesh HEQEP subproject (CP-2180) at  Chittagong, Bangladesh. 22-27 September, 2012
  16. Facilitator of the 4 days-long training Hands-on Workshop on “Tools for Molecular Biology and Bioinformatics in DNA Barcoding” organised jointly by the Poultry Research and Training Centre, Chittagong Veterinary and Animal Sciences University and University of Chittagong, Chittagong, Bangladesh. 13-16 February, 2012
  17. Two day-long Workshop on “AIF mobilization and proposal writing workshop” organised by Higher education Quality Enhancement Project (HEQEP) of University Grants Commission (UGC) of Bangladesh at Chittagong Veterinary and Animal Sciences University (CVASU), 30-31 May, 2011
  18. Two day-long Workshop on “Conceptualization of self assessment at Faculty of Veterinary Medicine at CVASU” organised by HEQEP-UGC project team of Chittagong Veterinary and Animal Sciences University (CVASU), 25-26 May, 2011
  19. Facilitator of the day-long workshop on “Sustainable Research Networks” organised by The British Council. Chittagong, Bangladesh. 3 April, 2010
  20. Three days-long workshop on “Building a successful international research career” organised by The British Council. Windsor, London, UK. 22-25 February, 2010
  21. One day long workshop on “Research priority settings in Agriculture” organised by Bangladesh Agricultural research Council (BARC), Chittagong, Bangladesh. 20 January, 2010.
  22. Three days-long workshop on “Proteomic characterization of macromolecular complexes involved in DNA metabolism” organised by International Centre for Genetic Engineering and Biotechnology (ICGEB), Trieste Italy. 20-22 May, 2009
  23. Three days-long workshop on “Molecular biology of Leishmania” organised by International Centre for Genetic Engineering and Biotechnology (ICGEB), Trieste Italy. 23-25 October, 2008
  24. One-day long workshop on “Research funding” organised by Association of Commonwealth Universities (ACU) in Birkbeck College, University of London, UK. 24 February 2005
  25. Two-day long workshop on “Publicising your ideas- How to use the media” organised by Association of Commonwealth Universities (ACU) and Cardiff School of Journalism, Media and Cultural Studies, University of Cardiff, Wales, UK. 19-20 February 2005
  26. One-day long workshop on “Accessing Information in developing Countries” organised by Association of Commonwealth Universities (ACU) in St. Catherine College, University of Oxford, Oxfordshire, UK. March, 2004

Oral presentation/ Abstracts

 

  1. Invited talk on Metagenomic data analyses strategies at Chittagong Veterinary and Animal Sciences University (CVASU), Bangladesh. 25-26 January, 2020
  2. Invited talk on Reliable identification of potential vector mosquitoes collected from Chittagong Bangladesh through morphotaxonomy and molecular DNA barcoding at 10th One Health Bangladesh Conference (OHBC), Radisson Blu, Dhaka, Bangladesh. 26-28 November, 2019
  3. Seminar on Sharing the experience of visiting Oregon State University Veterinary School organized by Directorate of Research and Extension, Chittagong Veterinary and Animal Sciences University (CVASU). 21 November 2019
  4. Invited talk on Next Generation Sequencing tools used for advanced genomics research on molecular biology and biotechnology organized by Department of Biotechnology and Genetic Engineering, Noakhali Science and Technology University (NSTU), Bangladesh. 14 November 2019
  5. Invited talk on Scopes and molecular methods used in Animal biotechnology: Bangladesh perspective East West University, Dhaka, Bangladesh. 29 October 2019
  6. Oral presentation on The Genome of the Black Bengal Goat at 16th International Scientific Conference of Chittagong Veterinary and Animal Sciences University (CVASU). 19-20 October 2019
  7. Invited talk on Next generation sequencing data: Analytical strategies and available software packages at Chittagong University (CVASU) organised by Jamal Nazrul Islam Research Centrefor Mathematical and Physical Sciences, University of Chittagong, Chittagong, Bangladesh. 2-3 October, 2019
  8. Seminar on The Genome of the Black Bengal Goat at Chittagong Veterinary and Animal Sciences University (CVASU) Bangladesh. 13 September 2019
  9. Invited talk on Commonwealth Scholarship experience at UK Universities: A journey of a lifetime at Chittagong Veterinary and Animal Sciences University (CVASU) organised by The British Council, Bangladesh. 31 July 2019
  10. Invited talk on Metagenomic tools to explore mastitis microbiome in dairy cattle Department of Biological Sciences, Carlson College of Veterinary Medicine, Oregon State University, Oregon, USA. 27 June 2019
  11. Invited talk on Scopes of biotechnology in Agricultural Research in commemorating World DNA day 2019 organised by Faculty of Biotechnology and Genetic Engineering, Sylhet Agricultural University (SAU), Bangladesh. 25 April 2019
  12. Invited talk on Scopes and molecular methods used in Animal biotechnology: Bangladesh perspective during first Biotechnology Summer School organised by YoungBB and GNOBB at Chittagong, Bangladesh. 22 March 2019
  13. Facilitator of the Training on Fundamental of research and critical reading of scientific articles organised by CVASU, Chittagong, Bangladesh. 14 December 2018
  14.  “Analysing NGS data using online accessible tools organised by Asian University for Women (AUW), Chittagong, Bangladesh. 6 December 2018
  15. HEQEP and CVASU: A proven relationship towards excellence in education and innovation organised by CVASU, Chittagong, Bangladesh. 22 November 2018
  16. Facilitator of the Training on Research methods, Tools and Techniques and scientific report writing organised by University of Science and Technology Chittagong (USTC), Chittagong, Bangladesh. 13 November 2018
  17. Invited talk on “Bioinformatics research in Bangladesh- prospects and challenges”. Speech given at the Lab of Genomic Big Data, College of Animal Science and Technology, Northwest Agriculture and Fishery University, Yangling, Shanxi, China. 21 October, 2018 
  18. High throughput Next Generation Sequencing tools and implications for advanced research on molecular parasitology” Key note Speech at 13th Biennial Conference of Bangladesh Society for Parasitology (BSP), Bangladesh Agricultural University (BAU). 25 Oct.  2018
  19. Conducting a Literature Review: Tools and strategies  Workshop on conducting successful research. Held at Premier University Chittagong. Organised by The British Council Bangladesh. 20 September 2018.
  20.  High throughput Next Generation Sequencing tools and implications for advanced research on molecular microbiology and biotechnology Key note Speech at 1st International Conference on Biological and Environmental Research (ICBER), Jessore University of Science and Technology (JUST). 16 September 2018
  21. “Sharing the experience of recent US visit: How One Health is implemented by US State and Federal agencies Chittagong Veterinary and Animal Sciences University (CVASU). 16 May 2018
  22. Next generation sequencing tools used for reliable pathogen detection and sustainable animal conservation” Invited Speaker, International Conference on Biotechnology in Health and Agriculture (ICBHA) 2017. Organized by Global Network of Bangladeshi Biotechnologists (GNOBB), University of Dhaka, Bangladesh. 29-30 December, 2017.
  23. Next Generation Sequencing (NGS) data analyses strategies: An introduction". Invited Speaker, 5th National Workshop on Bioinformatics and Computational Biology organised by Bangladesh Bioinformatics and Computational Biology Association (BBCBA), held in Bangladesh Agricultural Research Council (BARC), Farmgate, Dhaka. 26-28 December, 2017.
  24. “Sero-epidemiological investigation of toxoplasmosis in small ruminants in Chittagong Metropolitan area of Bangladesh” Invited Speaker, 6th National Conference on Tropical Medicine and Toxicology (BanTropTox), held in Bangladesh Academy for Rural Development (BARD), Comilla, 3-4 November, 2017
  25.  Next Generation Sequencing (NGS) data analyses strategies: Strategies and options". Invited Speaker, 4th National Workshop on Bioinformatics and Computational Biology organised by Bangladesh Bioinformatics and Computational Biology Association (BBCBA), held in Bangladesh Rice Research Institute (BRRI), Gazipur, Bangladesh. 13-14 December, 2017.
  26.  “One health initiatives in Bangladesh”. Invited Speaker, Faculty of Veterinary Medicine, Universiti Putra Malaysia (UPM), Kuala Lumpur, Malaysia 2 May, 2017
  27. One Health Institute at CVASU: Creating opportunities for interdisciplinary education, research and policy dialogue to resolve one health issues". Invited Speaker, 9th One Health Bangladesh Conference held in Radisson Blu Dhaka, Bangladesh. 17-18 September, 2017
  28.  Metagenomic data analyses with special reference to reliable and accurate pathogen identification". Invited Speaker, 4th National Workshop on Bioinformatics and Computational Biology organised by Bangladesh Bioinformatics and Computational Biology Association (BBCBA), held in Bangladesh Agricultural University (BAU), Mymensingh, Bangladesh. 23-24 May, 2017.
  29. Next Generation Sequencing (NGS) data analyses strategies: An introduction". Invited Speaker, 2nd National Workshop on Bioinformatics and Computational Biology organised by Bangladesh Bioinformatics and Computational Biology Association (BBCBA), held in Chittagong, Bangladesh. 18-21 December, 2016.
  30. Validation of Next Generation Sequencing (NGS) data analyses platforms for reliable pathogen identification through using modern computational biology tools". Fulbright alumni presentation at American Centre, US Embassy, Bangladesh. 17 November, 2016
  31. NGS Sequence data analyses platforms for reliable pathogen identification". Seminar organised by Dept. of Microbiology, University of Dhaka, Bangladesh. 19 November, 2016
  32. Next Generation Sequencing (NGS) data analyses for microbiome research with special reference to reliable pathogen detection"Postdoctoral research presentation at CVASU, Chittagong, Bangladesh. 29 September, 2016
  33. “One Health Institute at CVASU: Creating opportunities for interdisciplinary education, research and policy dialogue to resolve common issues involving human, animal and environmental health”. 5th National Conference of Bangladesh Society for Advancement of Tropical Medicine and Toxicology (BanTropTox-2016), BCPS Campus, Mohakhali, Dhaka, Bangladesh. 25-26 November, 2016
  34.  Bioinformatics for sustainable animal conservation: strategies and options”. National workshop on Bioinformatics for Sustainable Development in Agriculture, Health and Environment. Organised by Dept. of Statistics, University of Rajshahi, Bangladesh. 30-31 August, 2016
  35.  “Vector borne diseases with a zoonotic potential"Thematic presentation on celebration of World Veterinary Day at CVASU, Chittagong Bangladesh 25 April, 2015
  36. Comparative proteome analysis of C. parvum and C. hominis using 2-DE image analysis and tandem mass spectrometry", 12th International Congress of Parasitology (ICOPA XII), Melbourne, Australia. 15-20 August, 2010
  37. Comparative proteome analysis of C. parvum and C. hominis using 2-DE image analysis and tandem mass spectrometry" BSVER Annual Scientific Conference, Bangladesh Agricultural University, Mymensingh. 6-7 February, 2010
  38.  “Study on the prevalence of parasitic diseases of RCC breed of cattle and its comparison with other cattle breeds of Chittagong region”. Annual Research Presentation Workshop of Bangladesh Livestock Research Institute (BLRI), Dhaka. August, 2008
  39. "Proteome analysis of Cryptosporidium parvum". Annual Scientific Conference of the Chittagong Vet & Animal Sciences University, Bangladesh. 15-16 March, 2007   
  40. "Proteome analysis of Cryptosporidium parvum”. Proceedings of the British society for Parasitology (BSP) joint malaria and spring meeting, 3-6 April 2005. University of Nottingham, Nottinghamshire, UK. 4-7 April 2005
  41. Proteome analysis of Cryptosporidium parvum” Annual Post-graduate talk, Department of Veterinary Preclinical Science, Faculty of Veterinary Science, University of Liverpool, 7 February, 2005
  42. Proteome analysis of Cryptosporidium parvum”. Annual Post-graduate talk, Division of Infection and Immunity, Faculty of Biomedical and Life Sciences, University of Glasgow, 20 March, 2004. 
  43. First report of Heterakis gallinarum in Peafowl in Bangladesh” Annual Research Talk, Former Chittagong Government Veterinary College (CGVC), Chittagong, Bangladesh, 13-14 November 2002. 
  44. “Sulphonamide Resistance in Chicken Coccidiosis: A Clinicopathological Study” 7th BSVER Annual Scientific Conference, Former Chittagong Government Veterinary College (CGVC), Bangladesh, 13-14 November 2000
  45. “Acquired Sulphonamide Resistance in Chicken Coccidia in Bangladesh” Seventh BSVER Annual Scientific Conference, Former Chittagong Government Veterinary College (CGVC), Bangladesh, 13-14 November 2000

 

Poster presentation

 

  1. Molecular characterization of Cryptosporidium and Giardia in human and cattle in Chittagong". Z. Yasmin, M.A. Hossain, M.S. Islam, N. Jahan, A. Sultana and AMAM Zonaed Siddiki15th Annual Conference on Diarrheal Diseases and Nutrition (ASCODD), ICDDR`B, Dhaka, Bangladesh. 28-30 January 2020
  2.  “Molecular characterization of Cryptosporidium and Giardia in human and cattle in Chittagong". Z. Yasmin, M.A. Hossain, M.S. Islam, N. Jahan, A. Sultana and AMAM Zonaed Siddiki16th Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 19-20 October 2019
  3. Comparative microbiome analysis of bovine milk reveals association of microbiome signature and metabolic potentials in clinical mastitis". M. Nazmul Hoque, M Sultana, MA Hossain and AMAM Zonaed Siddiki16th Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 19-20 October 2019
  4.  “Metagenomic analyses to explore the microbiome of shidhal, a semi-fermented fish product of BangladeshT. Sultana, M. N. Hoque, M. S. Rahman, M.N.A. Khan, M. A. Mithu and AMAM Zonaed Siddiki16th Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 19-20 October 2019
  5.  “Reliable identification of potential vector mosquitoes collected from Chittagong Bangladesh through morphotaxonomy and molecular DNA barcodingAMAM Zonaed Siddiki, MS Sarker, S Mazumder, BA Bhuiya, K. Basher, and M.AHossain, 16th Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 19-20 October 2019
  6.  “Identification of microbial bioindicators for assessment of seawater contamination in ship dismantling zone of Chattogram”. AMAM Zonaed Siddiki, Sabrina Amin, Yasir Riza, Sanzida Alam and Farhana Haque Nimme. 7th Annual South Asia Biosafety Conference, Dhaka. 14-16 September 2019. 
  7.  “DNA barcoding and characterization of non-edible oil feedstock with potential for biodiesel production in Bangladesh”. Farhana Haque Nimme, Sabrina Amin, FahmidaBinta Wali and AMAM Zonaed Siddiki. 7th Annual South Asia Biosafety Conference, Dhaka. 14-16 September 2019. 
  8.  “Exploring Black Bengal goat mitogenome and its comparison with four domestic mammals”. KSM shawrob, M Billah and AMAM Zonaed Siddiki. World DNA Day Festival at Department of Genetic Engineering and Biotechnology, University of Chittagong. 25 April 2019. 
  9. “Identification of microbial bioindicators for assessment of seawater contamination in ship dismantling zone of Chattogram”. Sabrina Amin, Sanjida Alam, Sharmin Akter, Yasir Mohamed Riza, Farhana Haque, Binti Nath and AMAM Zonaed Siddiki. 6th International conference on Natural science and technology 2019 organised by Asian University for Women, Chittagong. 29-30 March 2019. [Winner of the Best Poster Award]
  10.  “Molecular characterization of Ascaridia galli using PCR and their phylogenetic analyses to explore genetic variability among Bangladeshi isolates collected from Chittagong region”. Ferdushy, T, AMAM Zonaed Siddiki et al, 13th Bienniel Scientific conference 2018 of Bangladesh Society for Parasitology (BSP), Bangladesh Agricultural University, Mymensingh. 25 October, 2018. 
  11.  “Surgical management of ocular thelaziasis in a goat-A case study”. Zarin S and AMAM Zonaed Siddiki et al, 13th Bienniel Scientific conference 2018 of Bangladesh Society for Parasitology (BSP), Bangladesh Agricultural University, Mymensingh. 25 October, 2018. 
  12.  “Reliable identification of potential vector mosquitoes collected from Chittagong Metropolitan Area through morphotaxonomy and molecular DNA barcoding”. AMAM Zonaed Siddiki et al, 13th Bienniel Scientific conference 2018 of Bangladesh Society for Parasitology (BSP), Bangladesh Agricultural University, Mymensingh. 25 October, 2018. 
  13.  “Molecular detection of Toxoplasma gondii in human abortus”. AMAM Zonaed Siddiki et al, 13th Bienniel Scientific conference 2018 of Bangladesh Society for Parasitology (BSP), Bangladesh Agricultural University, Mymensingh. 25 October, 2018. 
  14. Comparative functional Genomic analysis for important economic traits in Black Bengal Goat of Bangladesh”. AMAMZ Siddiki, MA Alam, M. Chowdhury2, KSM Shawrob, S Saha, M Billah, AKM Mollah and Gous Miah, The Second World Conference on Sheep, Nanjing Agricultural University, Nanjing, China. 15-18 October, 2018. 
  15. “Reliable identification of potential vector mosquitoes collected from Chittagong Metropolitan Area through morphotaxonomy and molecular DNA barcoding”. AMAM Zonaed Siddiki et al, 7th National Conference of Bangladesh Society for Advancement of Tropical Medicine and Toxicology (BanTropTox-2018), Chittagong Club, Chittagong. 12-13 October, 2018. 
  16. MA Mannan, MA Hossain and AMAMZ Siddiki,Sero-epidemiological investigation of toxoplasmosis in small ruminants in Chittagong Metropolitan area of Bangladesh.” 6th National Conference of Bangladesh Society for Advancement of Tropical Medicine and Toxicology (BanTropTox-2017), BARD Campus, Comilla, Bangladesh. 2017. 
  17. MA Mannan, S Chowdhury, MA Hossain and AMAMZ Siddiki, “Comparison of morphometric, microscopic and conventional PCR method for diagnosis of haemonchosis caused by Haemonchus contortus in sheep and goats in Bangladesh.” 14th Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University (CVASU), Chittagong, Bangladesh, 01-02 April, 2017 [Winner of the Best Poster Award]
  18. “Molecular characterization of different genotypes of Echinococcus granulosus in Chittagong, Bangladesh”. AMAM Zonaed Siddiki, Md. Ahasanul Hoque and Nitish C. Debnath5th National Conference of Bangladesh Society for Advancement of Tropical Medicine and Toxicology (BanTropTox-2016), BCPS Campus, Mohakhali, Dhaka, Bangladesh. 25-26 November, 2016. [Winner of the Best Poster Award]
  19.  “Morphometric identification and molecular characterization of Haemonchus spp. from small ruminants in Bangladesh.” MA Mannan, MA Hossain, S Chowdhury, T Ferdushy and AMAMZ Siddiki, 12th Biannual scientific conference of Bangladesh Society of Parasitology (BSP), held at Bangladesh Agricultural University, Mymensingh. 02 January 2016
  20. “Protein profile analysis of selected snake venoms available in poisonous snakes of Bangladesh by bioinformatics approach”. Sohana Akter Mina, Md. Habibul Hasan Mazumder, M. Abu Reza, Meherunnesa and AMAM Zonaed Siddiki. 4th National Conference of Bangladesh Society for Advancement of Tropical Medicine and Toxicology (BanTropTox-2015), CoxsBazar, Bangladesh. 17-18 December, 2015 [Winner of the Best Poster Award]
  21. “Survival of scolex of Echinococcus sp. in vitro and evaluation of scolicidal activity of selected plant extracts and conventional anthelmintics”, Md. Abdul Halim, Md. Omer Faruk, Md. Mamun Or Rashid, Md. Shafiqul Islam, Mohammad Alamgir Hossain, Md. Masuduzzaman and AMAM Zonaed Siddiki. 4th National Conference of Bangladesh Society for Advancement of Tropical Medicine (BAATM), CoxsBazar, Banglaesh. 17-18 December, 2015
  22. “Activation of sheep alveolar macrophages by Coxiella burnetii” Reginaldo G. Bastos, William C. Davis, Charles W. Frevert, AMAM Siddiki, Cleverson de Souza, Donald P. Knowles. 114th Annual General Meeting of American Society for Microbiology, Boston, MA, USA 17-20 May, 2014 
  23.  “Genotyping of Giardia intestinalis Assemblage E in diarrhoeic goat kids by sequence analysis of beta-giardin gene in Bangladesh”. MA Hossain, Z Tazrin, SA Mina, MAEK Emon, R Das, S Das, and AMAM Zonaed Siddiki, Tenth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 6 April 2012 
  24. Molecular characterization of Cryptosporidium xiaoi in diarrhoeic goat kids in Bangladesh by nested PCR amplification of 18s rRNA gene”. AMAM Zonaed Siddiki, M. Alam, Rasel Das, S. A. Mina, M. A. Alim, M. A. Hossain. Tenth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 6 April 2012 
  25. Use of Amplified ribosomal DNA restriction analysis (ARDRA) for characterizing bacteria causing bovine mastitis in Chittagong, Bangladesh MS Rahaman, MMR Moghal, MM Rahman, AMAM Zonaed Siddiki. Tenth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 6 April 2012 
  26.  “DNA barcoding of reptiles: Implications for venom biology research in Bangladesh" AMAM Siddiki, M A. Faiz, R.B. Currier, M.A.W. Chowdhury, B.C. Das, B.C. Sutradhar, M.M. Uddin,  A.A. Sayeed, A. Ghose, R. Harrison, Tenth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 6 April 2012 
  27. Characterization of Eimeria spp. in broiler chicken by PCR based on species-specific SCAR markers" AMAMZ Siddiki, D. Blake, S. Das, M. A. Alim, M. Masuduzzaman and M. A. Hossain, Ninth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 6-8 February 2012 [Winner of the Best Poster Award]
  28. “Molecular characterization of Staphylococcus spp. causing subclinical mastitis in dairy cows in Chittagong" Z. Farzana, N. N. Islam, D. Biswas, K. M. Kamaruddin, M. I. Uddin and AMAMZ Siddiki, Ninth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 6-8 February 2012  [Winner of the 2nd Best Poster Award]
  29. “Indian Rock Python- An exclusive post-mortem experience" B. C. Das, D. Biswas, S. Das, M. F. Hossain, M. A. Kashem and AMAMZ Siddiki, Ninth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 6-8 February 2012
  30. “First record of Haematomyzus elephantis in an Asian elephant in Bangladesh" M. A. Alim, S. Das, B. C. Das, M. F. Hossain and AMAMZ Siddiki, Ninth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 6-8 February 2012
  31.  “Analysis of global proteome of Cryptosporidium parvum sporozoites using sequence similarity-based BLAST searching" AMAMZ Siddiki and J M Wastling, International Conference on “Bioinformatics in Human and Animal Genome” organised by Cold Spring Harbor Asia Conferences Asia in Suzhou, China, 14-18 November, 2011.
  32. Analysis of post-translational modification of protein by MALDI ToF-ToF tandem mass spectrometry" AMAMZ Siddiki and Mike Myers, BSVER Annual Scientific Conference 2011, Bangladesh Agricultural University, Mymensingh. 9-10 February, 2011
  33. “Molecular Characterization and identification of Cryptosporidium and Giardia as food borne zoonoses in Bangladesh” M.A. Hossain, A.M.A.M. Zonaed Siddiki, et al. BSVER Annual Scientific Conference 2011, Bangladesh Agricultural University, Mymensingh. 9-10 February, 2011
  34. Analysis of post-translational modification of protein by MALDI ToF-ToF tandem mass spectrometry" AMAMZ Siddiki and Mike Myers, Eighth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Bangladesh. 23-25 September, 2010   
  35. “Molecular Characterization and identification of Cryptosporidium and Giardia as food borne zoonoses in Bangladesh” M.A. Hossain, A.M.A.M. Zonaed Siddiki, et al. Eighth Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 23-25 September, 2010   [Winner of the Best Poster Award 2010]
  36. “One Health in South Asia” A.M.A.M. Zonaed Siddiki, M. Begum and S A Khan. International Conference on One Health in South Asia. ICDDR,B, Dhaka, Bangladesh. 8 April 2010.
  37. “The Barcoding of Cryptosporidium: Bangladesh perspective” A.M.A.M. Zonaed Siddiki and R. Haque. Second International Conference on Barcoding of Life, Academia Sinica, Taipei, Taiwan 17-21 September, 2007.
  38. “Capacity development towards risk analysis and prevention of zoonoses in Bangladesh”. A.M.A.M. Zonaed Siddiki, R. Haque, Sophie M. Latham and Jonathan M. Wastling. Annual Scientific Conference of the Chittagong Veterinary & Animal Sciences University, Chittagong, Bangladesh. 15-16 March, 2007 [Winner of the Best Poster Award 2007] 
  39. “Proteome analysis of CryptosporidiumA.M.A.M.Z. Siddiki and J.M. Wastling. Bioscience 2005, Scottish Exhibition and Conference Centre (SECC), Glasgow, Scotland, UK. 17-21 July, 2005. 
  40. “Proteome analysis of Cryptosporidium parvumA.M.A.M.Z. Siddiki and J.M. Wastling. 12th Scottish Universities Molecular Parasitology (SUMP) Kindrogan Meeting, Kindrogan, Scotland, UK. 7-9 May, 2004. 
  41. “Proteome analysis of Cryptosporidium parvumA.M.A.M.Z. Siddiki and J.M. Wastling. British society for Parasitology (BSP) joint malaria and spring meeting, University College Chester, Cheshire, UK, 4-7 April 2004. 
  42. “Proteome analysis of Cryptosporidium parvumA.M.A.M.Z. Siddiki and J.M. Wastling. Annual Post-graduate posters open day, Division of Infection and Immunity, Faculty of Biomedical and Life Sciences, University of Glasgow, UK. 12 May 2004. 
  43. “Proteome analysis of Cryptosporidium parvumA.M.A.M.Z. Siddiki and J.M. Wastling. 11th Scottish Universities Molecular Parasitology (SUMP) Kindrogan meeting, Kindrogan, Scotland, UK. March 2003. 
  44. “Proteome analysis of Cryptosporidium parvumA.M.A.M.Z. Siddiki and J.M. Wastling. Post-graduate poster open day, Division of Infection and Immunity, Faculty of Biomedical and Life Sciences, University of Glasgow, UK. 22 March, 2003. 

 


Others

Editorial Board/ Member

 

  1.   Executive editor (2013-2015), Bangladesh Journal of Veterinary and Animal Sciences
  2.   Editorial board member (2018-2020), Bangladesh Journal of Veterinary and Animal Sciences
  3.   Member, Advisory Board, Research in Agriculture, Livestock and Fisheries
  4.   Editorial board member, Asian-Australasian Journal of Bioscience and Biotechnology
  5.   Editorial board member, Journal of Advanced Veterinary and Agricultural Research 
  6.   Reviewer, MEEGID Infection, Genetics and Evolution
  7.   Reviewer, Journal of Asiatic Society of Bangladesh
  8.   Reviewer, International Journal of Natural Sciences
  9.   Reviewer, Applied Water Science

 

 

Membership / Professional role 

 

  1. Ex member, University Syndicate (2014-2015), CVASU
  2. Vice-President, Bangladesh Society for Bioinformatics (BSB)
  3. General Secretary, Bangladesh Bioinformatics and Computational Biology Association (BBCBA)
  4. Member, Academic council, University of Science and Technology Chittagong (USTC)
  5. Member, Academic council, CVASU
  6. Co-convenor, BanglaBOL (DNA Barcoding) Forum
  7. Member: Commission on Education and Communication (CEC) of IUCN
  8. Outreach Member. American Society for Microbiology (ASM)
  9. Member, International Society for Infectious Diseases (ISID)
  10. Member, Global Network of Bangladeshi Biotechnologists (GNOBB)
  11. Member, Bangladesh Veterinary Association (BVA)
  12. Member, Bangladesh Veterinary Council (BVC)
  13. Member, Bangladesh Society for Veterinary Education and Research (BSVER)
  14. Ex-member, British Society for Parasitology (BSP), 2002-2006
  15. Member, Executive Committee, Bangladesh Society for Parasitology (BSP)
  16. Member, Bangladesh Society for Microbiology (BSM)
  17. Member, Bangladesh Society for Veterinary Microbiology and Public Health (BSVMPH)
  18. Executive member, Bangladesh Society for Advancement of Tropical Medicine (BAATM)
  19. Life member, UK Alumni Association in Bangladesh.

Positions held

  1. Professor, Department of Pathology and Parasitology, Chittagong Veterinary & Animal Sciences University (CVASU), Bangladesh. From 1 January, 2013 to till
  2. Director, One Health Institute, CVASU From 1 January, 2017 to 30 September 2017
  3. US Fulbright visiting scholar, Computational Biology Institute (CBI), George Washington University, Washington DC, USA. From 10 January, 2016 to 6 August 2016
  4. Postdoctoral fellow (DAAD scholar), Institute for Parasitology, Leipzig University, Germany. From May till June, 2015
  5. Postdoctoral fellow, Department of Veterinary Microbiology and Pathology, College of Veterinary

Medicine, Washington State University, Pullman, WA, USA. From 31 March, 2014 to 24 May, 2014

  1. Director, Research and Extension, CVASU From 26 February, 2013 to 30 December 2015
  2. Associate Professor and Head of the Department of Pathology and Parasitology, Chittagong Veterinary & Animal Sciences University (CVASU), Bangladesh. From Sep, 2008 to Dec, 2012
  3. Commonwealth Postdoctoral fellow, Department of Infection Biology, Institute of Infection and Global Health, Faculty of Veterinary Science, University of Liverpool, UK. From 1 October, 2012 to 30 January, 2013
  4. Part-time Teacher in the Department of Genetic Engineering and Biotechnology, Chittagong University, Bangladesh. From October, 2011 to December, 2015
  5. Lab in Charge, Animal Disease Diagnostic Laboratory (ADDL), CVASU, Chittagong, Bangladesh. From 20 April 2011 to December, 2015
  6. Endeavour Postdoctoral fellow, Parasitology Group (Prof. Robin Gasser Lab), Faculty of Veterinary Medicine, University of Melbourne, Australia. From September, 2010 to December, 2010
  7. ICGEB Postdoctoral fellow, Protein Networks Research Group (Dr. Mike Myers Lab). International Centre for Genetic Engineering and Biotechnology (ICGEB), Trieste, Italy. From October, 2008 to September, 2009
  8. Assistant Professor in the Department of Pathology and Parasitology, Chittagong Veterinary & Animal Sciences University (CVASU), Khulshi- 4202, Chittagong, Bangladesh. From July 2002 to September 2008
  9. Lecturer in the Department of Pathology and Parasitology, Chittagong Government Veterinary College (CGVC), Pahartali- 4202, Chittagong Bangladesh. From 10 October 2000 to 20 July 2002
  10. Scientific Officer in Bangladesh Livestock Research Institute (BLRI) under “Poultry Technology Development Project” funded jointly by the Government of Bangladesh (GOB) and Japan International Co-operation Agency (JICA). From 1 August 2000 to 9 October 2000
  11. Veterinary Surgeon at District Veterinary Hospital at Habiganj, Sylhet, Bangladesh under “District Veterinary Hospital Establishment Project” funded by the Department of Livestock Services (DLS), Government of Bangladesh. From 5 May 2000 to 31 July, 2000
  12. Research Associate in the Department of Parasitology, Bangladesh Agricultural University (BAU) under “Control of Chicken Coccidiosis in Bangladesh” project funded by Bangladesh Agricultural University Research System (BAURES). From 1 January 1999 to 4 May 2000

Teaching experiences

  1. Teaching Veterinary Pathology and Animal Parasitology to undergraduate and postgraduate students enrolled in the Department of Pathology and Parasitology, Chittagong Veterinary and Animal Sciences University (CVASU) since joining in October, 2000.
  2. Part-time teacher, Department of Genetic Engineering and Biotechnology, University of Chittagong, Bangladesh (Course teacher of Human and Animal Biotechnology course).
  3. External examiner (Parasitology), Dept. of Animal Husbandry and Veterinary Science, University of Rajshahi, Bangladesh
  4. External examiner (Biotechnology), Dept. of Biochemistry and Biotechnology, University of Science and Technology Chittagong (USTC), Bangladesh
  5. External examiner (MS Thesis), Department of Genetic Engineering and Biotechnology, University of Chittagong, Bangladesh
  6. MS Thesis Supervisor, Dept of Pharmacy, Noakhali Science and Technology University (NSTU), Bangladesh
  7. MS Thesis co-supervisor, Department of Genetic Engineering and Biotechnology, University of Chittagong, Bangladesh
  8. Demonstrating undergraduate students in Biology Teaching Centre (BTC) during the session 2003-2004 in the Faculty of Biomedical and Life Sciences, University of Glasgow, Scotland, UK.
  9. Training farmers and animal owners on disease management strategies in Poultry Research and Training Centre (PRTC), Chittagong, Bangladesh.
  10. Training farmers and prospective poultry and dairy farm owners on vaccination and disease management skills in Regional Youth Training Centre (YTC), Chittagong, Bangladesh.

 

Postgraduate supervision (MS/PhD Thesis)

 

A. Ongoing:

  1. Zebunnahar Yasmin (2018-2020) Molecular epidemiology of Cryptosporidium and Giardia. PhD ThesisChittagong Veterinary and Animal Sciences University (CVASU)
  2. Ayesha Sultana. (2020-2021) Molecular detection of Cryptosporidium and Giardia, MS Thesis. Chittagong Veterinary and Animal Sciences University (CVASU).
  3. Naznin Islam (2020-21) Whole genome sequence of Catla catla from the river Halda. MS Thesis, Dept of Zoology, University of Chittagong
  4. Suma Islam (2020-21) Whole genome sequence of Labeo rohita from the river Halda. MS Thesis, Dept of Zoology, University of Chittagong
  5. Azlina   Kabir (2020-21) Whole genome sequence of Dolphin from the river Halda. MS Thesis, Dept of Zoology, University of Chittagong

B. Completed:

  1. Md. Nazmul Haque (2016-2020) Epidemiological analysis and characterization of microbiome associated to bovine mastitis. PhD Thesis. Dept. of Microbiology, University of Dhaka, Bangladesh
  2. Sanzida Abida (2019-2020) Morphology and Genetic Diversity of two Species of Squirrel (Hoary-bellied and Five-stripped Palm) in Bangladesh. MS Thesis, Dept of Zoology, University of Chittagong
  3. Md. Maqsud Alam (2011) Molecular identification and characterisation of Cryptosporidium xiaoi in diarrhoeic goat kids in Bangladesh. MS Thesis. Dept. of Pathology and Parasitology, Chittagong Veterinary and Animal Sciences University (CVASU).
  4. Md. Maqsud Alam (2011) Molecular identification and characterisation of Cryptosporidium xiaoi in diarrhoeic goat kids in Bangladesh. MS Thesis. Dept. of Pathology and Parasitology, Chittagong Veterinary and Animal Sciences University (CVASU).
  5. Md. Abdul Halim (2012) Evaluation of in vitro survival of scolices of Hyatid cysts an their drug sensitivity against conventional anthelmintics. MS Thesis. Dept. of Pharmacy, Noakhali University of Science and Technology (NUST), Bangladesh.
  6. Zinat Farzana (2012) Characterisation of Staphylococcus aureus causing bovine mastitis by molecular and biochemical approaches. MS Thesis. Dept. of Genetic Engineering and Biotechnology, University of Chittagong, Bangladesh.
  7. S. M. Murshid Alam (2012) Characterisation of Escherichia coli causing bovine mastitis by molecular and biochemical approaches. MS Thesis. Dept. of Genetic Engineering and Biotechnology, University of Chittagong, Bangladesh.
  8. Sohana Akter (2012-2013) Genotyping of Cryptosporidium xiaoi by sequence analysis of 18s rDNA gene in goat kids Banglades. MS Thesis. Dept. of Genetic Engineering and Biotechnology, University of Chittagong, Bangladesh.
  9. Israt Jahan Ira (2012-2013) Molecular characterization of Eimeria spp. causing chicken coccidiosis using species-specific SCAR markers. MS Thesis. Dept. of Pharmacy, Noakhali University of Science and Technology (NUST), Bangladesh.
  10. Mahmuda Begum (2012-2013) Characterisation of Staphylococcus aureus from chicken-rinse by molecular and biochemical approaches. MS Thesis. Dept. of Genetic Engineering and Biotechnology, University of Chittagong, Bangladesh.
  11. Md. Saifur Rahman Kaosar (2012-2013) Development of suitable protocol for sensitive and rapid detection of mastitis by Amplification of ribosomal DNA Restriction Analysis (ARDRA). MS Thesis. Dept. of Pharmacy, Noakhali University of Science and Technology (NUST), Bangladesh.
  12. Junaid Hossain (2012-2013) Characterisation of Streptococcus spp. causing bovine mastitis by molecular and biochemical approaches. MS Thesis. Dept. of Pharmacy, Noakhali University of Science and Technology (NUST), Bangladesh.
  13. Rinky Das (2013-2014) Comparative analyses of Cryptosporidium hominis and C. parvum by Artemis genome comparison tools. MS Thesis. Dept. of Biotechnology and Genetic Engineering, Mawlana Bhasani Science and Technology University, Bangladesh.
  14. Md. Alamgir Hossain (2014-2015) DNA barcoding of different snakes available in Bangladesh. MS Thesis. Dept. of Zoology, University of Chittagong, Bangladesh.
  15. Rafi Hatem (2014-2015) Using DNA based approach for detection of food adulteration and microbial contamination. MS Thesis. Dept. of Biochemistry and Biotechnology, University of Science and Technology Chittagong (USTC), Bangladesh. 
  16. Md. Abdul Mannan (2012-2015) Study on prevalence and molecular characterization of Toxoplasma spp. and Sarcocystis spp. screened from slaughter animal, dairy cattle and occupational worker. PhD Thesis. Chittagong Veterinary and Animal Sciences University (CVASU).
  17. Md. Abdul Mannan (2014-2017) Molecular epidemiology of haemonchosis in small ruminants in Bangladesh. PhD Thesis. Chittagong Veterinary and Animal Sciences University (CVASU).
  18. Priyanka Rani Naha (2018) Prevalence and intensity of parasite in Jew Fish (Otolithoides pama). MS Thesis. Dept. of Aquaculture, Faculty of Fisheries, Chittagong Veterinary and Animal Sciences University (CVASU).
  19. Ismat Jahan (2018) Taxonomic confirmation and species composition of mud crab Scylla sp. Available in Bangladesh.Dept. of Marine Bioresource Science, Faculty of Fisheries, Chittagong Veterinary and Animal Sciences University (CVASU).
  20. Md. Omer Faruk (2014-2017) Molecular epidemiology of Echinococcus sp. PhD Thesis. Chittagong Veterinary and Animal Sciences University (CVASU).
  21. Shama Ranjan Barua (2014-2018) Molecular epidemiology of Bovine rotavirus, PhD Thesis. Chittagong Veterinary and Animal Sciences University (CVASU).

PhD Thesis examiner

1. U. Suriyakala (2014) Scientific validation of the functional belief in regulating estrous cycle using Ficus religious (L): A study employing polycystic syndrome induced rat model. PhD Thesis. Dept. of Environmental Biotechnology. Bharatidasan University, Tamilnadu, India.

2. Sudhir Verma (2015) “Screening of molecular markers for superior lactation genes in breeds of Cows in Haryana:” PhD Thesis. Dept. of Biotechnology. Bharathiar University, Tamilnadu, India.

3. Al Amin (2019) Development of effective vaccine against local isolates of Foot and Mouth disease virus in Bangladesh. Department of Microbiology, University of Dhaka, Bangladesh.


Honours


Acedemic Awards
  1. International Visitor Leadership Program (2018) travel grant awarded to visit USA public health institutes to get hands on experiences on One Health implementation in USA, 25000 USD
  2. Fulbright Visiting Fellowship (2015-16) at Computational Biology Institute (CBI) of The George Washington University (GWU), USA. To work on metagenomics and NGS data analyses for rapid pathogen identification with Prof. Keith A. Crandall.
  3. DAAD Visiting Fellowship (2015), to work with Prof. Arwid Daugschies, Institute for Parasitology, Leipzig University, Germany. April-May, 2015
  4. Matsumae International Fellowship (Japan).   Did not avail.
  5. TWAS Associate (2014-17) nominated by the Academy of Sciences for the Developing World (TWAS, Italy) Did not avail.
  6. Norman E. Borlaug International Agricultural Science and Technology Fellowship awarded by United States Department of Agriculture (USDA) (2012-13). Washington State University, USA. (31 March- 24 May, 2014). 24000 USD
  7. “Australian Alumni Excellence Award 2014” under the Endeavour Award category hosted by Australian High Commission in Bangladesh and Australian Trade Commission (Austrade). 23 January 2014
  8. Commonwealth Academic Fellowship by Commonwealth Scholarship Commission, UK toward working in research partnership development at University of Liverpool, UK  (20012-2013), 10,000 GB Pound Sterling (Visiting Fellowship)
  9. TWAS Meeting Grant by the Academy of Sciences for the Developing World (TWAS) to organize International Training workshop on “Bioinformatics and Computational Biology in South Asia perspective” to be held at CVASU, Bangladesh in collaboration with 6 other Universities inside the country. (Workshop held during 25-26 September 2012), 3,000 US Dollar. (Meeting coordinator/Principal organiser)
  10. Endeavour postdoctoral fellowship (Australia) for the project entitled “Molecular epidemiology and subgenotyping of Cryptosporidium isolates available in Bangladesh”, Department of Veterinary Parasitology, University of Melbourne, Australia (2010-2011), 45,000 AUS Dollar
  11. The British Council travel award under INSPIRE Talented Researcher Scheme to attend a workshop in London, United Kingdom. February 2010; 2,000 GB Pound Sterling,
  12. ICGEB Postdoctoral fellowship by International Centre for Genetic Engineering and Biotechnology (ICGEB), Trieste, Italy for the project entitled “Improvement of Mass spectrometry-based identification of protein post-translational modification”.(2008-2009), 36,000 US Dollar 
  13. Commonwealth PhD Scholarship by Commonwealth Scholarship Commission, UK toward studying for PhD at University of Glasgow and University of Liverpool, UK (2002-2006), 45,000 GBP

Research Grants
  1. Medical Research Council (MRC), UK (Global Challenge Research Fund Health and Context Call) project entitled “Engaging communities to address antimicrobial resistance: Identifying contextualised and sustainable community-led solutions in low resource settings” (2020-2023), 100,000 US Dollar (Co- Investigator)
  2. University Grants Commission of Bangladesh (UGC) / CVASU funded research project entitled “Comparative genomics and Genome-wide association studies of Black Bengal goats" (2020-2021) 3000 US Dollar (Principal Investigator)
  3. Bangladesh Livestock Research Institute (BLRI) funded project entitled “Whole genome re-sequencing of Gayal (Bos frontalis) and genome annotation to unveil genetic variations to explore the evolution and adaptation at genome level” 30,000 US Dollar (Co Investigator)
  4. United States Department of Agriculture (USDA) funded Biotech Agricultural Research project entitled “Molecular Characterization and identification of important infectious and zoonotic diseases in Livestock and poultry in Bangladesh” (2017-2020), 112,000 US Dollar (Principal Investigator)
  5. Polli Karma Sohayak Foundation (PKSF)/ IDF funded Research project entitled “De novo sequence assembly of Indian Major Carps and genome annotation to explore genetic variations” (2020-2021), 35,000 US Dollar (Principal Investigator)
  6. University Grants Commission of Bangladesh (UGC) / CVASU funded research project entitled Development of whole genome sequence database of Black Bengal Goat to accelerate genetic up-gradation (2018-2019), 22,000 US Dollar (Principal investigator).
  7. University Grants Commission of Bangladesh (UGC)-HEQEP funded research project entitled “Transformation of HEQEP supported infrastructures into a national reference lab for zoonoses research at CVASU” (2017-2018), 90,000 US Dollar (co-investigator)
  8. University Grants Commission of Bangladesh (UGC)-HEQEP funded research project entitled “Capacity Enhancement for Postgraduate Research and Training at Poultry Research and Training Centre of CVASU” (2014-2017), 122,000 US Dollar (Principal investigator)
  9. University Grants Commission of Bangladesh (UGC) funded research project entitled “Molecular characterization and identification of bovine tuberculosis and their implications for zoonotic transmission” (2013-2014), 2,000 US Dollar (Principal investigator)
  10. Bangladesh Agricultural Research Council (BARC) funded research project entitled “Study on the prevalence of parasites of economic importance in cattle calves in coastal and hilly regions of Bangladesh” (20012-2013), 16,000 US Dollar (Co-investigator).
  11. Higher Education Quality Enhancement Project (HEQEP) fund for the project entitled “Strengthening and expansion of postgraduate research capabilities for the diagnosis, prevention and control of infectious zoonotic diseases in livestock and poultry of Bangladesh”. (2012-2015) 94,000 USD. (Co-investigator/ASPM)
  12. COMSTECH-TWAS Research Grant by the Academy of Sciences for the Developing World (TWAS) for the project entitled “Bioinformatics approach to Cryptosporidium and capacity development for postgaduate studies and research on bioinformatics and computational biology in CVASU, Bangladesh”. (2011-2012) 2,200 US Dollar. (Principal investigator)
  13. Chittagong Veterinary and Animal Sciences University (CVASU) funded research project entitled “Developing PCR-based screening and surveillance system for animal reservoirs towards understanding the molecular epidemiology of leishmaniasis in Bangladesh” (2011-2012), 25,000 US Dollar (Co-investigator)
  14. Chittagong Veterinary and Animal Sciences University (CVASU) funded research project entitled “Pathological investigation of diseases found in the slaughtered food animal carcasses in Chittagong district” (2011-2012), 20,000 US Dollar (Co-investigator)
  15. TWAS Research Grant by the Academy of Sciences for the Developing World (TWAS) for the project entitled “Molecular Characterization and identification of Cryptosporidium and Giardia as food borne zoonoses in Bangladesh”. (2010-2011) 25,000 US Dollar. (Co-investigator)
  16. Bangladesh Agricultural Research Council (BARC) funded research project entitled “A coordinated project on the Surveillance of important Infectious, Zoonotic and Emerging Diseases of Livestock and Poultry in Bangladesh” (2009-2012), 214,000 US Dollar (Principal investigator).
  17. The British Council (Bangladesh) funded research project entitled “Capacity Development towards risk analysis and prevention of zoonotic diseases in Bangladesh” (2007-2009), 20,000 GB Pound Sterling (Principal investigator/Overseas coordinator)
  18. Bangladesh Livestock Research Institute (BLRI) funded research project entitled “Study on the prevalence of parasitic diseases of RCC breed of cattle and its comparison with other cattle breeds of Chittagong region” (2006-2008), 20,000 US Dollar  (Principal investigator)

Membership
  1. Ex member, University Syndicate (2014-2015), CVASU
  2. Vice-President, Bangladesh Society for Bioinformatics (BSB)
  3. General Secretary, Bangladesh Bioinformatics and Computational Biology Association (BBCBA)
  4. Member, Academic council, University of Science and Technology Chittagong (USTC)
  5. Member, Academic council, CVASU
  6. Co-convenor, BanglaBOL (DNA Barcoding) Forum
  7. Member: Commission on Education and Communication (CEC) of IUCN
  8. Outreach Member. American Society for Microbiology (ASM)
  9. Member, International Society for Infectious Diseases (ISID)
  10. Member, Global Network of Bangladeshi Biotechnologists (GNOBB)
  11. Member, Bangladesh Veterinary Association (BVA)
  12. Member, Bangladesh Veterinary Council (BVC)
  13. Member, Bangladesh Society for Veterinary Education and Research (BSVER)
  14. Ex-member, British Society for Parasitology (BSP), 2002-2006
  15. Member, Executive Committee, Bangladesh Society for Parasitology (BSP)
  16. Member, Bangladesh Society for Microbiology (BSM)
  17. Member, Bangladesh Society for Veterinary Microbiology and Public Health (BSVMPH)
  18. Executive member, Bangladesh Society for Advancement of Tropical Medicine (BAATM)
  19. Life member, UK Alumni Association in Bangladesh.

Publications






Selected Papers and Publications

 

2021

 

  1. ABMMK Islam, MA Khan, R Ahmed, MS Hossain, SMT Kabir, MS Islam, AMAMZ Siddiki. (2021) Transcriptome of nasopharyngeal samples from COVID-19 patients and a comparative analysis with other SARS-CoV-2 infection models reveal disparate host responses against SARS-CoV-2. Journal of Translational Medicine 19(1):32. doi:10.1186/s12967-020-02695-0. ( Q2; IF: 4.124)
  2. M. Nazmul Hoque, M. Shaminur Rahman, Rasel Ahmed, Md. Sabbir Hossain, Md. Shahidul Islam, Tofazzal Islam, M. Anwar Hossain, AMAMZ Siddiki (2021) Diversity and genomic determinants of the microbiomes associated with COVID-19 and non-COVID respiratory diseases, Gene Reports, 23, 101200, https://doi.org/10.1016/j.genrep.2021.101200.
  3. Md. Mahbub Hasan, Rasel Das, Md. Rasheduzzaman, Md. Hamed Hussain, Nazmul Hasan Muzahid, Asma Salauddin, Meheadi Hasan Rumi, S.M. Mahbubur Rashid, AMAMZ Siddiki, Adnan Mannan (2021)Global and local mutations in Bangladeshi SARS-CoV-2 genomes, Virus Research, 297, https://doi.org/10.1016/j.virusres.2021.198390 .
  4. S Sikdar, T Das, EH Sajib, KM Rahman, AMAMZ Siddiki and Md Bashir Uddin (2021) Journal of Buffalo Science. 10 (21-31). https://doi.org/10.6000/1927-520X.2021.10.04
  5. SR Barua, S Islam, AMAMZ Siddiki et al., (2021) Comparison of diagnostic tests for detection of bovine rotavirus A in calf feces. Macedonian Veterinary Review 44(1): 37-45 DOI: 10.2478/macvetrev-2020-0033 
  6. MA. Mannan, M. A. Alim, M. B. Manik, K. M. U. Rahman, M. A. Hossain and AMAMZ Siddiki (2021). Prevalence of anaplasmosis in cattle from Chattogram Division of Bangladesh. Bangladesh Journal of Veterinary and Animal Sciences, 9(1):67-73.
  7. Ming Li, Congjiao Sun, Naiyi Xu, Peipei Bian, Xiaomeng Tian, Xihong Wang, Yuzhe Wang, Xinzheng Jia, Rasmus Heller, Mingshan Wang, Fei Wang, Xuelei Dai, Rongsong Luo, Yingwei Guo, Xiangnan Wang, Peng Yang, Shunjin Zhang, Xiaochang, Chaoliang Wen, Fangren Lan, AMAMZ Siddiki, Chatmongkon Suwannapoom, Xin Zhao, Qinghua Nie, Xiaoxiang Hu, Yu Jiang, Ning Yang (2021) De novo assembly of 20 chickens reveal a new pan-genome pattern and abundant hidden genes in sub-telomeric regions. Nature  (Under review)
  8. GK Deb, R Khatun, SMJ Hossain, SS Rahaman, MAB Bhuiyan, S Mobassirin, S Afrin, MS Islam, NR Sarker, MSA Bhuiyan, AMAMZ Siddiki (2021) Complete mitochondrial genome sequence of Bos frontalis (Gayal) of Bangladesh. BMC Veterinary Science (Under review)
  9. SMR Islam, AY Tanzina, MJ Foysal, MN Hoque, AMAMZ Siddiki, Alfred Tay, SMJ Hossain, MA Bakar, M Mostafa, MH Rumi, & A Mannan (2021) Insights into the nutritional properties and microbiome diversity in Bangladeshi yogurt. Scientific Reports (Under review)
  10. S. Sikdar, M. Zaman, TA Enan, J. Alam, AMAMZ Siddiki (2021) Comparative genome analysis of Lumpy Skin disease virus with Goat and sheep pox virus indicates similar vaccine efficiency. Bioinformation (Under review) 
  11. JA Joty, TA Enan, M Zaman, S Sikdar, Z Farzana, A Islam, MM Hassan, AMAMZ Siddiki (2021) Animal reservoirs of the SARS-CoV-2 coronavirus: Exploring the sequence similarities and protein structural features. MEEGID Infection, Genetics and Evolution. (Under review)
  12. M. A. Hossain, MA. Mannan, M. B. Manik, K. M. U. Rahman, and AMAMZ Siddiki (2021). Prevalence of babesiosis in cattle from Chattogram Division of Bangladesh. Bangladesh Journal of Veterinary and Animal Sciences, (Under review)
  13. MJ Tahsan, MK Alam, MA Hossain and AMAMZ Siddiki (2021). Molecular Characterization of Streptococcus agalactiae and S. dysgalactiae causing bovine mastitis by PCR and Multiplex PCR Approach. Bangladesh Journal of Veterinary Medicine. (Under review)

 

2020

 

  1. MN Hoque, A Istiaq, RA Clement, KM Gibson, O Saha, OK Islam, RA Abir, M Sultana, AMAMZ Siddiki, KA Crandall, MA Hossain (2020) Insights into the resistome of bovine clinical mastitis microbiome, a key factor in disease complication. Frontiers in Microbiology 11:860 https://doi.org/10.3389/fmicb.2020.00860 ( Q1; IF: 4.236)
  2. SM Lokman, MM Hasan, M Rasheduzzaman, A Salauddin, AMAMZ Siddiki, A. Mannan (2020) “Exploring the genomic and proteomic variations of SARS-CoV-2 spike glycoprotein: a computational biology approach”. MEEGID Infection, Genetics and Evolution. 84: 104389 https://doi.org/10.1016/j.meegid.2020.104389 ( Q1; IF: 2.773)
  1. MN Hoque, A Istiaq, MS Rahman, MR Islam, A Anwar, AMAMZ Siddiki, Munawar Sultana, Keith A. Crandall, M. Anwar Hossain (2020) Microbiome Dynamics in Different Conditions of Bovine Mastitis and Genomic Determinants. Genomics 112 (6) https://doi.org/10.1016/j.ygeno.2020.09.039 ( Q1; IF: 6.205)
  2. AMAMZ Siddiki, G Miah, MS Islam, M Kumkum, MH Rumi and A Baten (2020) "Goat genomic resources: The search for genes associated with its economic traits" International Journal of Genomics. https://doi.org/10.1155/2020/5940205 ( Q3; IF: 2.414)
  3. S. Kundu, MM Rahman, MF Ahsan, V Kumar, AMAMZ Siddiki (2020) DNA barcoding elucidates the population genetic diversity of venomous Cobra species (Reptilia: Elapidae) in Indo-Bangladesh regionMitochondrial DNA Part B: Resources 5 (3): 2525-2530 https://doi.org/10.1080/23802359.2020.1778552 ( Q4; IF: 0.885)
  4. MM Kibria, N. Islam, KSM Shawrob, M billah, MH Rumi, AMAMZ Siddiki (2020) “Complete mitochondrial genome sequence of Catla catla (Hamilton, 1822) from the Halda river of Bangladesh”. Mitochondrial DNA Part B Resources 5(3), 3233-3235. https://doi.org/10.1080/23802359.2020.1809542  ( Q4; IF: 0.885)
  5. R Ahmed,R.  Hasan, AMAMZ Siddiki, MS Islam (2020). Host range projection of SARS-CoV-2: South Asia perspective. Infection Genetics and Evolution doi: 10.1016/j.meegid.2020.104670. ( Q1; IF: 2.773)
  6. MA Amin, M. Nazmul Hoque, AMAM Z Siddiki, Sukumar Saha, Md. Mostofa Kamal (2020) Antimicrobial resistance situation in animal health of Bangladesh. Veterinary World. 13(12): 2713–2727.  doi: www.doi.org/10.14202/vetworld.2020.2713-2727  ( Q2)
  7. EA Rana, NS Chowdhury, MS Islam, …. and AMAMZ Siddiki (2020) Molecular detection and prevalence of severe acute respiratory syndrome coronavirus 2 during the early outbreak in Southern Bangladesh. International Journal of One health. 6(2): 153-159          www.doi.org/10.14202/IJOH.2020.153-159 ( Q3)
  8. S Amin, S Ghosh, B Biswas, M Arifuzzaman, MAK Azad, AMAMZ Siddiki (2020) Molecular identification of four medicinal plants using DNA barcoding approach from Chittagong, Bangladesh. Journal of Advanced Biotechnology and Experimental Therapeutics (JABET) 3(3); 268-272 https://doi.org/10.5455/jabet.2020.d134  

 

 

2019

 

  1. AMAMZ Siddiki, A Baten, M Billah, MAU Alam, KSM Shawrob, S Saha, M Chowdhury, AH Rahman, M Stear, G Miah, M Kumkum, MS Islam, MA Hossain, AKMM Mollah and MKI Khan.(2019) “The genome of the Black Bengal goat (Capra hircus)”. BMC Research Notes. 12:362-34 https://doi.org/10.1186/s13104-019-4400-3 ( Q2)
  2. AMAMZ Siddiki, AH Rahman, Michael Stear, MKI Khan, Gous Miah, Masum Billah, MAU Alam, KSM Shawrob, M Kumkum, S Saha, M Chowdhury, AKMM Mollah and A Baten (2019). “Complete Mitochondrial Genome Sequence of Black Bengal Goat (Capra hircus)”. Mitochondrial DNA Part B: Resources .4(2): 2121-2122 https://doi.org/10.1080/23802359.2019.1623098  (Q4; IF: 0.885)
  3. N. Hoque, AMAMZ Siddiki et al, (2019) "Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis" Scientific Reports. 9: 13536 https://doi.org/10.1038/s41598-019-49468-4    ( Q1; IF: 3.998)
  4. MA. Halim, MO Faruk, M. Akter, MM Rashid and AMAMZ Siddiki (2019) “Protoscolicidal effects of Zingiber officinale and Allium cepa ethanolic extracts using hydatid cysts protoscolices and comparison of their activities with conventional anthelmintic”. Bangladesh Veterinary Journal. 53:1-4 DOI: 10.32856/BVJ-53-2019.01
  5.  S. Zinnuraine, T. Kamal and AMAMZ Siddiki (2019) Histopathological investigation of a unilateral spermatocytic seminoma in a dog. Bangladesh Journal of Veterinary and Animal Sciences. 7(1) 
    1. MA Mannan, AMAMZ Siddiki, MS Miya, S Chowdhury, and MA Hossain. (2019) “Molecular detection of Haemonchus sppand the effect of different abiotic factors on the hatch rate during in vitro assays.” Bangladesh Journal of Veterinary and Animal Sciences. 8(2) 1-6
    2. T. Sultana, S. K. Ghosh, S. Akter, MA Mithu, NN Tamzi, and AMAMZ Siddiki (2019) Nutritional and microbiological assessment of shidhal, a semi-fermented fish product of Bangladesh. Bangladesh Journal of Veterinary and Animal Sciences. 8(1) 56-64
    3. AMAMZ Siddiki, MS Sarker, S. Mazumder, B.A. Bhuiya, B.A., K. Basher, T. Kamal and M.A. Hossain, (2019) DNA barcoding and morphotaxonomic analyses of mosquitoes collected from Chattogram Metropolitan areaBangladesh Journal of Veterinary and Animal Sciences. 8(1) 1-9
    4. SR Baura, TM Rakib, MM Rahman, S Seleck, M Masuduzzaman, AMAMZ Siddiki, MA Hossain and S Chowdhury (2019). Disease burden and associated factors of rotavirus infection in calves in south-eastern part of Bangladesh. Asian Journal of Medical and Biological Research 5: 107-116 [doi: 10.3329/ajmbr.v5i2.42492]

 

 

2017-18

 

  1. AMAMZ Siddiki et. al. (2018) Morphological identification of Calicophoron sp. (Digenea: Paramphistomidae) in the rumen of infected goat. Bangladesh Journal of Veterinary and Animal Sciences. 6 : 65-69
  2. S.R. Barua, T.M. Rakib, S. Das, AMAMZ Siddiki et al (2018) Hematological and serological changes in neaonatal diarrhoic calves infected with bovine rotavirus. Multidisciplinary Advances in Veterinary Science. 2(3): 356-366
  3. S.R. Barua, T.M. Rakib, S. Das, AMAMZ Siddiki et al (2018) Histopathology in bovine rotavirus (Type A) infected calves and its confirmation by ELISA and RT-PCR. Journal of Dairy and Veterinary Sciences. 6(4): 1-5
  4. MA Mannan, AMAMZ Siddiki, S. Das, MA Alim, and M A Hossain (2017). “Molecular identification and Characterization of Trypanosoma infection in cattle in Chittagong Metropolitan area, Bangladesh” Bangladesh Journal of Veterinary and Animal Sciences. 5(2) 52-60.
  5. Rahman, MS, Rahman, MM, Moghal, MMR, Rakib, TM and AMAMZ Siddiki, (2017). “Characterization of bacteria causing bovine mastitis by Amplified Ribosomal DNA Restriction Analysis (ARDRA) method”. Bangladesh Journal of Veterinary and Animal Sciences. 5(2) 44-51
  6. MA Mannan, J Mazumdar, S Chowdhury, M Masuduzzaman, AMAMZ Siddiki and MA Hossain. (2017). “Histopathological and haematological changes in haemonchosis in small ruminants of Bangladesh.” Bangladesh Journal of Veterinary and Animal Sciences. 5(2), 17-23
  7. M.O. Faruk, AMAMZ Siddiki, M.F. Karim, M. Masuduzzaman, S. Chowdhury, M.S. Islam and M.A. Hossain (2017) Molecular characterization of Echinococcus granulosus through amplification of 12S rRNA gene and cox1 gene fragments from cattle in Chittagong, BangladeshInternational Journal of Biological, Biomolecular, Agricultural, Food and Biotechnological Engineering. 11 (4), 301-305
  8. M.O. Faruk, AMAMZ Siddiki, M. Masuduzzaman, S. Chowdhury, M.A. Hossain (2017) Identification and molecular characterization of Echinococcus granulosus from domestic goat in Chittagong, Bangladesh. Tropical Biomedicine 34 (4) 831-840
  9. M.K.I. Khan, AMAMZ Siddiki, M.R. Ali and M.A. Akter (2017). Identification of best performer hilly chickens of Bangladesh in consideration of climate change factors: light and heat. Indian Journal of Animal Sciences.87(8), 991-995
  10. M.O. Faruk, AMAMZ Siddiki, M.S. Islam, A. Rekha, S. Chowdhury, M. Masuduzzaman, M.A. Hossain (2017) Identification of Non Cerebral Cyst: zoonotic Taenia multiceps in domestic goat in Bangladesh. Veterinary World. 10(10), 1156-1160. doi: 10.14202/vetworld.2017.1156-1160

 

2014-16

 

  1. T.M. Rakib,, M.S. Islam,, M.M. Rahman, AMAMZ Siddiki, Sutradhar, B.C., Hossain, M.A., Masuduzzaman, M., (2016) A case report on invasive ductal carcinoma in dog. Advances in Animal and Veterinary Science 4: 1-4.
  2. Rahman, M.M., Akter, Y., Jamil, S., Arifuzzaman, M., Islam, M.S., AMAMZ Siddiki (2015) A multiplex PCR based approach for reliable identification of different meat species and possible adulteration in meat markets in Chittagong, Bangladesh. Bangladesh Journal of Veterinary and Animal Sciences, 3(1-2); 54-58. 
  3. AMAMZ Siddiki, Sohana Akter Mina, Zinat Farzana, Bibi Ayesa, Rasel Das, Mohammad Alamgir Hossain (2015) Molecular characterization of Cryptosporidium xiaoi in goat kids in Bangladesh by nested PCR amplification of 18s rDNA gene. Asian Pacific Journal of Tropical Biomedicine, 5(3); 202-207. doi:10.1016/S2221-1691(15)30007-1
  4. M. A. Hossain, S. A. Mina, Lolo Wal Marzan, M.A.E.K. Emon, R. Das and AMAMZ Siddiki (2015) Molecular characterization of Giardia intestinalis Assemblage E from goat kids in Bangladesh. Asian Pacific Journal of Tropical Disease. 5(5), 374-379. doi:10.1016/S2222-1808(14)60800-8
  5. N N Islam, M Akter, Z Farzana, AJB Kader, I Uddin, AMAMZ Siddiki and KM Kamaruddin (2014) Detection of Staphylococcus aureus in Frozen Chicken Rinse through Bacteriological and Nuc Gene Specific PCR Methods and their Drug Resistance Patterns in Southern Chittagong, Bangladesh. Research Journal of Microbiology. 9 (5). 251-264.  DOI: 10.3923/jm.2014.251.264
  6. N N Islam, SM Nur, Z Farzana, I Uddin, KM Kamaruddin and AMAMZ Siddiki (2014) Rapid identification of Eosin Methylene Blue positive E coli by Specific PCR from frozen chicken rinse in Bangladesh. Microbiology Journal. 2014.  DOI. 10.3923/mj.2014
  7. NN Islam, Z Farzana, AMAA Chowdhury, A Mannan, KM Kamaruddin and AMAMZ Siddiki (2014) Characterization of bovine subclinical mastitis caused by S. aureus in Bangladesh by bacteriological and molecular approaches. Asian J. of Biological Sciences. 7(1), 1-12.

 

2010-2013

 

  1. B. C. Das, D. Biswas, M. F. Hossain, S. Das and AMAMZ Siddiki (2013) A rare post-mortem experience of Indian rock python (Python molurus molurus) that swallowed a whole barking deer. Veterinary World. 6(3) March, 2013. doi:10.5455/vetworld.2013.163-165 
  2. AMAMZ Siddiki (2012) Sporozoite proteome analysis of Cryptosporidium parvum by one dimensional SDS-PAGE and Liquid chromatography tandem mass spectrometry. Journal of Veterinary Science 14(2), 107-114. http://dx.doi.org/10.4142/jvs.2013.14.2.107 
  3. AMAMZ Siddiki (2012) Proteome analysis of Cryptosporidium parvum and C. hominis using two-dimensional electrophoresis, image analysis and tandem mass spectrometry. Iranian Journal of Biotechnology. 10(3), 198-207
  4. M. A. Alim, S. Das, K. Roy, M. Masuduzzaman, S. Sikder, M. M. Hassan, AMAMZ Siddiki and M. A. Hossain. (2011) Prevalence of haemoprotozoan diseases in cattle population of Chittagong division, Bangladesh. Pakistan Veterinary Journal, 32(2) 221-224

 

2000-2010

 

  1. AMAMZ Siddiki, MB Uddin, MB Hasan, MF Hossain, MM Rahman, BC Das, MS SarkerIMA Hena, M Masuduzzaman and MA Hossain. (2010) “Coproscopic and haematological approaches to determine the prevalence of helminthiasis and protozoan diseases of Red Chittagong Cattle breed in Bangladesh. Pakistan Veterinary Journal, 30(1) 1-6
  2. AMAMZ Siddiki and J M Wastling (2009) “Charting the proteome of Cryptosporidium parvum sporozoites using sequence similarity-based BLAST searching” Journal of Veterinary Science. 10(3) 203-210. DOI: 10.4142/jvs.2009.10.3.203 
  3. AMAMZ Siddiki and M. Masuduzzaman (2009) “Cryptosporidium and cryptosporidiosis: A brief review” Bulgarian Journal of Veterinary Medicine. 12 (2) 91-111
  4. AMAMZ Siddiki, M.J. Karim and E. H. Chowdhury (2008) “Sulphonamide Resistance in Chicken Coccidiosis: A Clinicopathological Study” Bangladesh Journal of Microbiology. 25(1) 60-64
  5. AMAMZ Siddiki (2007): Standardisation of sample preparation for two-dimensional electrophoresis of Cryptosporidium parvum sporozoites.  Bangladesh Journal of Microbiology. 24(2) 119-124
  6. AMAMZ Siddiki (2007): The science of Proteomics: Prospects of post-genomic approaches for microbial protein identification and molecular biological research. Bangladesh Journal of Medical Research. 10(3), 59-67
  7. AMAMZ Siddiki, M. B. Hossain, A.S.M. Lutful Ahasan (2007): A review on subcellular or organellar proteomics with special reference to apicomplexan parasites. Bangladesh Journal of Veterinary Medicine. 5(2) 1-7
  8. M. Z. Alam, M. J. Karim, N. Begum and AMAMZ Siddiki (2000). “Comparison of chemoprophylaxis and immunisation with stored live oocysts in controlling chicken coccidiosis” The Bangladesh Veterinarian. 17: 1-5
  9. AMAMZ Siddiki, M.J. Karim, M.K. Islam and M.Z. Alam (2000) “Sulphonamide resistance in field isolates of chicken coccidia in Bangladesh” The Bangladesh Veterinarian. 17: 11-15.

 

Book Chapters

 

  1. AMAMZ Siddiki, M.N. Haque, A. Saiyara, M. M. Alam (2021) Fundamentals of metagenomics infrastructures to explore microbiome of human and animals. Introduction to Bioinformatics and Computational Biology. (In press). Published by Dept. of Statistics, University of Rajshahi.
  2. AMAMZ Siddiki, M. M. Alam, M.N. Haque, A. Saiyara (2021) Bioinformatics and computational biology tools used for metagenomics research. Introduction to Bioinformatics and Computational Biology. (In press). Published by Dept. of Statistics, University of Rajshahi.

 

Manuscripts submitted / Under review

 

  1. SR Barua, TM Rakib, AMAMZ Siddiki et al., (2021) Comparison of diagnostic tests for detection of rotavirus in calf feces in Bangladesh. Journal of infection in developing countries (Submitted)
  2. SR Barua, TM Rakib, AMAMZ Siddiki et al., (2021) Molecular genomics analyses of bovine rotavirus A in calves in Chittagong, Bangladesh. Virology (Submitted)
  3. MA Mannan, S Chowdhury, AMAMZ Siddiki and MA Hossain. 2021. “Genetic variability of Haemonchus contortus isolated from small ruminants in Bangladesh.” submitted into Parasites and Vectors
  4. MA Mannan, S Chowdhury, AMAMZ Siddiki and MA Hossain. 2021. “Epidemiological investigation of haemonchosis in small ruminants in Bangladesh.” Under review in revised version at BMC Veterinary Research
  5. MJ Tahsan, MK Alam, MA Hossain and AMAMZ Siddiki .2021. “Molecular Characterization of Streptococcus agalactiae and S. dysgalactiae causing bovine mastitis by PCR and Multiplex PCR Approach”. Submitted to Bangladesh Journal of Veterinary Medicine.
  6. MA Hossain, MAW Chowdhury, Y Akter and AMAMZ Siddiki .2021. “Molecular analysis to develop DNA barcode of some snakes of Bangladesh”. Submitted to Bangladesh Journal of Veterinary and Animal Sciences.





Funding


Current Funding

Funding/ Awards/ Research grants

 

  1. University Grants Commission of Bangladesh (UGC) / CVASU funded research project entitled “Comparative genomics and Genome-wide association studies (GWAS) of Black Bengal goats" (2020-2021) (Principal Investigator)
  2. Bangladesh Livestock Research Institute (BLRI) funded project entitled “Whole genome re-sequencing of Gayal (Bos frontalis) and genome annotation to unveil genetic variations to explore the evolution and adaptation at genome level” (2020-2021) (Co Investigator)
  3. Polli Karma Sohayak Foundation (PKSF)/ IDF funded Research project entitled “De novo sequence assembly of Indian Major Carps and genome annotation to explore genetic variations” (2020-2021) (Principal Investigator)
  4. Ranka Denim Textile Ltd. funded Research project entitled “Efficiency of Corona Killer treated Fabrics to remove virus and bacteria ” (2020-2021) (Principal Investigator)
  5. East West University Center for Research and Training (EWUCRT)  funded project entitled "Identification and characterization of MDR, XDR and PDR bacteria from clinical samples"  (Co Investigator) 

Project Completed

Funding/ Awards/ Research grants

 

  1. United States Department of Agriculture (USDA) funded Biotech Agricultural Research project entitled “Molecular Characterization and identification of important infectious and zoonotic diseases in Livestock and poultry in Bangladesh” (2017-2020),  (Principal Investigator)
  2. University Grants Commission of Bangladesh (UGC) / CVASU funded research project entitled Development of whole genome sequence database of Black Bengal Goat to accelerate genetic up-gradation (2018-2019), 22,000 US Dollar (Principal investigator).
  3. University Grants Commission of Bangladesh (UGC)-HEQEP funded research project entitled “Transformation of HEQEP supported infrastructures into a national reference lab for zoonoses research at CVASU” (2017-2018), 90,000 US Dollar (co-investigator)
  4. International Visitor Leadership Program (2018) travel grant awarded to visit USA public health institutes to get hands on experiences on One Health implementation in USA, 25000 USD
  5. Fulbright Visiting Fellowship (2015-16) at Computational Biology Institute (CBI) of The George Washington University (GWU), USA. To work on metagenomics and NGS data analyses for rapid pathogen identification with Prof. Keith A. Crandall.
  6. DAAD Visiting Fellowship (2015), to work with Prof. Arwid Daugschies, Institute for Parasitology, Leipzig University, Germany. April-May, 2015
  7. Matsumae International Fellowship (Japan).   Did not avail.
  8. TWAS Associate (2014-17) nominated by the Academy of Sciences for the Developing World (TWAS, Italy) Did not avail.
  9. University Grants Commission of Bangladesh (UGC)-HEQEP funded research project entitled “Capacity Enhancement for Postgraduate Research and Training at Poultry
     Research and Training Centre of CVASU” (2014-2017), 122,000 US Dollar (Principal investigator)
  10. Norman E. Borlaug International Agricultural Science and Technology Fellowship awarded by United States Department of Agriculture (USDA) (2012-13). Washington State University, USA. (31 March- 24 May, 2014). 24000 USD
  11. “Australian Alumni Excellence Award 2014” under the Endeavour Award category hosted by Australian High Commission in Bangladesh and Australian Trade Commission (Austrade). 23 January 2014
  12. Training grant from Emerging Nation Science Foundation (ENSF/Italy) to attend the Lab-based training course  on “Molecular and cellular biology of parasites and vectors” organised by Liverpool School of Tropical Medicine in Liverpool, UK, (7 January -1 February, 2013), 1,900 GBP
  13. University Grants Commission of Bangladesh (UGC) funded research project entitled “Molecular characterization and identification of bovine tuberculosis and their implications for zoonotic transmission” (2013-2014), 2,000 US Dollar (Principal investigator)
  14. Commonwealth Academic Fellowship by Commonwealth Scholarship Commission, UK toward working in research partnership development at University of Liverpool, UK  (20012-2013), 10,000 GB Pound Sterling (Visiting Fellowship)
  15. TWAS Meeting Grant by the Academy of Sciences for the Developing World (TWAS) to organize International Training workshop on “Bioinformatics and Computational Biology in South Asia perspective” to be held at CVASU, Bangladesh in collaboration with 6 other Universities inside the country. (Workshop held during 25-26 September 2012), 3,000 US Dollar. (Meeting coordinator/Principal organiser)
  16. Bangladesh Agricultural Research Council (BARC) funded research project entitled “Study on the prevalence of parasites of economic importance in cattle calves in coastal and hilly regions of Bangladesh” (20012-2013), 16,000 US Dollar (Co-investigator).
  17. Higher Education Quality Enhancement Project (HEQEP) fund for the project entitled “Strengthening and expansion of postgraduate research capabilities for the diagnosis, prevention and control of infectious zoonotic diseases in livestock and poultry of Bangladesh”. (2012-2015) 94,000 USD. (Co-investigator/ASPM)
  18. COMSTECH-TWAS Research Grant by the Academy of Sciences for the Developing World (TWAS) for the project entitled “Bioinformatics approach to Cryptosporidium and capacity development for postgaduate studies and research on bioinformatics and computational biology in CVASU, Bangladesh”. (2011-2012) 2,200 US Dollar. (Principal investigator)
  19. Chittagong Veterinary and Animal Sciences University (CVASU) funded research project entitled “Developing PCR-based screening and surveillance system for animal reservoirs towards understanding the molecular epidemiology of leishmaniasis in Bangladesh” (2011-2012), 25,000 US Dollar (Co-investigator)
  20. Travel grant from Emerging Nation Science Foundation (ENSF/Italy) to present the poster in International Conference on “Bioinformatics in Human and Animal Genome” organised by Cold Spring Harbor Asia Conferences Asia in Suzhou, China, (14-18 November, 2011), 20,000 USD
  21. Chittagong Veterinary and Animal Sciences University (CVASU) funded research project entitled “Pathological investigation of diseases found in the slaughtered food animal carcasses in Chittagong district” (2011-2012), 20,000 US Dollar (Co-investigator)
  22. Endeavour postdoctoral fellowship (Australia) for the project entitled “Molecular epidemiology and subgenotyping of Cryptosporidium isolates available in Bangladesh”, Department of Veterinary Parasitology, University of Melbourne, Australia (2010-2011), 45,000 AUS Dollar
  23. TWAS Research Grant by the Academy of Sciences for the Developing World (TWAS) for the project entitled “Molecular Characterization and identification of Cryptosporidium and Giardia as food borne zoonoses in Bangladesh”. (2010-2011) 25,000 US Dollar. (Co-investigator)
  24. The British Council travel award under INSPIRE Talented Researcher Scheme to attend a workshop in London, United Kingdom. February 2010; 2,000 GB Pound Sterling,
  25. Bangladesh Agricultural Research Council (BARC) funded research project entitled “A coordinated project on the Surveillance of important Infectious, Zoonotic and Emerging Diseases of Livestock and Poultry in Bangladesh” (2009-2012), 214,000 US Dollar (Principal investigator).
  26. ICGEB Postdoctoral fellowship by International Centre for Genetic Engineering and Biotechnology (ICGEB), Trieste, Italy for the project entitled “Improvement of Mass spectrometry-based identification of protein post-translational modification”.(2008-2009), 36,000 US Dollar 
  27. The British Council (Bangladesh) funded research project entitled “Capacity Development towards risk analysis and prevention of zoonotic diseases in Bangladesh” (2007-2009), 20,000 GB Pound Sterling (Principal investigator/Overseas coordinator)
  28. Bangladesh Livestock Research Institute (BLRI) funded research project entitled “Study on the prevalence of parasitic diseases of RCC breed of cattle and its comparison with other cattle breeds of Chittagong region” (2006-2008), 20,000 US Dollar  (Principal investigator)
  29. Commonwealth PhD Scholarship by Commonwealth Scholarship Commission, UK toward studying for PhD at University of Glasgow and University of Liverpool, UK (2002-2006), 45,000 GBP
  30. National Science and Technology Fellowship, Government of Bangladesh, 2000-2001. 1,500 US Dollar  (Principal investigator)

Supervision


Current

  PG (PhD)
SL No. Student Name Roll No. Reg No. Session Degree Supervisor
1. Zebunnahar Yasmin 1 11 2019-20 PG (PhD) CoI

Thesis Title :
Molecular epidemiology of Cryptosporidium and Giardia
Thesis Title : Molecular epidemiology of Cryptosporidium and Giardia


Collaboration